The research team of Evolution of Semantic Annotations (ELISA) project will regularly share the scientific publications and others documents related to their work.

Scientific publications

S. D. Cardoso, C. Reynaud-Delaitre, M. Da Silveira, Y-C Lin, A. Gross, E. Rahm, C. Pruski, Towards a Multi-level Approach for the Maintenance of Semantic Annotations, Proceedings of the 10th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2017), HEALTHINF, Porto, Portugal, February 21-23, 2017

A. Gross, C. Pruski, E. Rahm, Evolution of biomedical ontologies and mappings: Overview of recent approaches, Computational and Structural Biotechnology Journal, 14, 333-340, 2016

V. Christen, A. Gross, E. Rahm, A Reuse-based Annotation Approach for Medical Documents. Proc. 15th International Semantic Web Conference (ISWC), Springer LNCS 9981, pp. 135-150 , 2016

S. D. Cardoso, C. Pruski, M. Da Silveira, Y-C Lin, A. Gross, E. Rahm, C. Reynaud-Delaitre, Leveraging the Impact of Ontology Evolution on Semantic Annotations, Knowledge Engineering and Knowledge Management - 20th International Conference, (EKAW) 2016, Bologna, Italy, November 19-23, 2016

C. Pruski, J. C. Dos Reis, M. Da Silveira, Capturing the relationship between evolving biomedical concepts via background knowledge,9th international Semantic Web Applications and Tools for the Life Sciences (SWAT4LS), Amsterdam, The Netherlands, December 5-8, 2016

Related Publications

A. Ben Abacha, J.C. Dos Reis, Y. Mrabet, C. Pruski, M. Da Silveira, Towards natural language question generation for the validation of ontologies and mappings, Journal of Biomedical Semantics, 7(1), 2016

M. Da Silveira, J. C. Dos Reis, C. Pruski, Management of Dynamic Biomedical Terminologies: Current Status and Future Challenges, IMIA Yearbook of Medical Informatics, 10(1), 125-133, 2015

V. Christen, M. Hartung, A. Gross, Region Evolution eXplorer - A tool for discovering evolution trends in ontology regions, Journal of Biomedical Semantics, 6(26), 2015

J. C. Dos Reis, C. Pruski, M. Da Silveira, C. Reynaud-Delaître, DyKOSMap: A framework for mapping adaptation between biomedical knowledge organization systems, Journal of Biomedical Informatics, 55, 153-173, (doi:10.1016/j.jbi.2015.04.001), 2015

V. Christen, A. Gross, M. Hartung, REX - a tool for discovering evolution trends in ontology regions, Proc. of the 10th Intl. Conference on Data Integration in the Life Sciences (DILS), Lisbon, Portugal, July 2014

J. C. Dos Reis, D. Dinh, M. Da Silveira, C. Pruski, C. Reynaud-Delaître, Recognizing lexical and semantic change patterns in evolving life science ontologies to inform mapping adaptation, Artificial Intelligence in Medicine, 63(3), 153-170, (DOI: http://dx.doi.org/10.1016/j.artmed.2014.11.002), 2015

D. Dinh, J. C. Dos Reis, C. Pruski, M. Da Silveira, C. Reynaud-Delaître, Identifying relevant concept attributes to support mapping maintenance under ontology evolution, Web Semantics: Science, Services and Agents on the World Wide Web, 29(0), 53-66, Life Science and e-Science, (DOI: 10.1016/j.websem.2014.05.002), 2014

J. C. Dos Reis, C. Pruski, M. Da Silveira, C. Reynaud-Delaître, Understanding semantic mapping evolution by observing changes in biomedical ontologies, Journal of Biomedical Informatics, 47, 71-82, 2014.

M. Hartung, A. Gross, E. Rahm, COnto-Diff : Generation of Complex Evolution Mappings for Life Science Ontologies, Journal of Biomedical Informatics 46(1): 15-32, 2013

J.C. Dos Reis, C. Pruski, M. Da Silveira, C. Reynaud-Delaître, Characterizing Semantic Mappings Adaptation via Biomedical KOS Evolution: A Case Study Investigating SNOMED CT and ICD, AMIA 2013 Annual Symposium, Washington DC (USA), 2013

J.C. Dos Reis, D. Dinh, C. Pruski, M. Da Silveira, C. Reynaud-Delaître, Mapping Adaptation Actions for the Automatic Reconciliation of Dynamic Ontologies, ACM International Conference on Information and Knowledge Management (CIKM 2013), San Francisco, CA (USA), 2013

A. Gross, J.C. Dos Reis, M. Hartung, C. Pruski, E. Rahm, Semi-Automatic Adaptation of Mappings between Life Science Ontologies, Proceedings of the Data Integration in the Life Sciences conference (DILS), Montreal (Canada), 2013

A. Gross, M. Hartung,  K. Prüfer, J. Kelso, E. Rahm, Impact of Ontology Evolution on Functional Analyses, Bioinformatics 28(20): 2671-2677, 2012

M. Hartung, A. Gross, E. Rahm, CODEX: Exploration of semantic changes between ontology versions, Bioinformatics 28(6): 895-896, 2012

T. Kirsten, A. Gross, M. Hartung,  E. Rahm, GOMMA: A Component-based Infrastructure for managing and analyzing Life Science Ontologies and their Evolution, Journal of Biomedical Semantics 2(6), 2011

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